IL_4U27_192

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4U27|1|CA|U|244, 4U27|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U27_192 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0963

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4U27|1|CA|G|242
4U27|1|CA|A|243
4U27|1|CA|U|244
4U27|1|CA|U|245
4U27|1|CA|A|246
4U27|1|CA|G|247
*
4U27|1|CA|C|277
4U27|1|CA|G|278
4U27|1|CA|A|279
4U27|1|CA|C|280
4U27|1|CA|G|281
4U27|1|CA|A|282
4U27|1|CA|U|283
4U27|1|CA|C|284

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17