IL_4U27_276

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U27_276 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.0845

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4U27|1|DA|U|1004
4U27|1|DA|C|1005
4U27|1|DA|C|1006
4U27|1|DA|C|1007
4U27|1|DA|A|1008
4U27|1|DA|A|1009
4U27|1|DA|A|1010
4U27|1|DA|G|1011
*
4U27|1|DA|C|1150
4U27|1|DA|A|1151

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20