IL_4U27_383

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUU*AUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U27_383 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.2394

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4U27|1|DA|G|869
4U27|1|DA|U|870
4U27|1|DA|U|871
4U27|1|DA|U|872
*
4U27|1|DA|A|905
4U27|1|DA|U|906
4U27|1|DA|G|907
4U27|1|DA|C|908

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16