IL_4U27_384

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGCAAG*CAACCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U27_384 not in the Motif Atlas

Geometric match to IL_6DVK_004

Geometric discrepancy: 0.36

The information below is about IL_6DVK_004

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

4U27|1|DA|G|874
4U27|1|DA|G|875
4U27|1|DA|C|876
4U27|1|DA|A|877
4U27|1|DA|A|878
4U27|1|DA|G|879
*
4U27|1|DA|C|898
4U27|1|DA|A|899
4U27|1|DA|A|900
4U27|1|DA|C|901
4U27|1|DA|C|902
4U27|1|DA|C|903

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16