IL_4U3M_077

3D structure

PDB id

4U3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Anisomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

4U3M|1|1|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3M_077 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.05

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

4U3M|1|1|A|1901
4U3M|1|1|G|1902
4U3M|1|1|U|1903
4U3M|1|1|C|1904
4U3M|1|1|G|1905
4U3M|1|1|G|1906
*
4U3M|1|1|C|2333
4U3M|1|1|U|2334
4U3M|1|1|G|2335
4U3M|1|1|U|2336

Current chains

Chain 1

25s rRNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain N3

60S ribosomal protein L23-A