3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAAAAAAUU*AUAUUAGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_172 not in the Motif Atlas
Homologous match to IL_4V88_425
Geometric discrepancy: 0.1834
The information below is about IL_4V88_425
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53064.1
Basepair signature
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

4U3M|1|2|G|751
4U3M|1|2|A|752
4U3M|1|2|A|753
4U3M|1|2|A|754
4U3M|1|2|A|755
4U3M|1|2|A|756
4U3M|1|2|A|757
4U3M|1|2|U|758
4U3M|1|2|U|759
*
4U3M|1|2|A|791
4U3M|1|2|U|792
4U3M|1|2|A|793
4U3M|1|2|U|794
4U3M|1|2|U|795
4U3M|1|2|A|796
4U3M|1|2|G|797
4U3M|1|2|C|798

Current chains

Chain 2
18S rRNA

Nearby chains

Chain C1
40S ribosomal protein S11-A
Chain D2
40S ribosomal protein S22-A
Chain S4
40S ribosomal protein S4-A
Chain S9
40S ribosomal protein S9-A

Coloring options:


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