3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GACACCACAAAA*UGAAAAUGGAUGGCGC
Length
28 nucleotides
Bulged bases
4U3M|1|5|C|1196, 4U3M|1|5|A|1302, 4U3M|1|5|U|1305
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_283 not in the Motif Atlas
Geometric match to IL_5TBW_052
Geometric discrepancy: 0.0395
The information below is about IL_5TBW_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53762.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

4U3M|1|5|G|1194
4U3M|1|5|A|1195
4U3M|1|5|C|1196
4U3M|1|5|A|1197
4U3M|1|5|C|1198
4U3M|1|5|C|1199
4U3M|1|5|A|1200
4U3M|1|5|C|1201
4U3M|1|5|A|1202
4U3M|1|5|A|1203
4U3M|1|5|A|1204
4U3M|1|5|A|1205
*
4U3M|1|5|U|1299
4U3M|1|5|G|1300
4U3M|1|5|A|1301
4U3M|1|5|A|1302
4U3M|1|5|A|1303
4U3M|1|5|A|1304
4U3M|1|5|U|1305
4U3M|1|5|G|1306
4U3M|1|5|G|1307
4U3M|1|5|A|1308
4U3M|1|5|U|1309
4U3M|1|5|G|1310
4U3M|1|5|G|1311
4U3M|1|5|C|1312
4U3M|1|5|G|1313
4U3M|1|5|C|1314

Current chains

Chain 5
25s rRNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain l3
60S ribosomal protein L3
Chain l7
60S ribosomal protein L7-A
Chain m0
60S ribosomal protein L10
Chain m6
60S ribosomal protein L16-A
Chain o3
60S ribosomal protein L33-A
Chain q0
Ubiquitin-60S ribosomal protein L40

Coloring options:


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