3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGAGUAUG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_420 not in the Motif Atlas
Homologous match to IL_4V88_440
Geometric discrepancy: 0.0385
The information below is about IL_4V88_440
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
5

Unit IDs

4U3M|1|6|G|1111
4U3M|1|6|G|1112
4U3M|1|6|A|1113
4U3M|1|6|G|1114
4U3M|1|6|U|1115
4U3M|1|6|A|1116
4U3M|1|6|U|1117
4U3M|1|6|G|1118
*
4U3M|1|6|U|1129
4U3M|1|6|G|1130
4U3M|1|6|A|1131
4U3M|1|6|A|1132
4U3M|1|6|A|1133
4U3M|1|6|C|1134

Current chains

Chain 6
18S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain d3
40S ribosomal protein S23-A
Chain q1
60S ribosomal protein L41-A

Coloring options:


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