3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GCCAGCGA*UUGUGAAAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_480 not in the Motif Atlas
Homologous match to IL_8P9A_448
Geometric discrepancy: 0.1048
The information below is about IL_8P9A_448
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_91698.1
Basepair signature
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
Number of instances in this motif group
2

Unit IDs

4U3M|1|2|G|1480
4U3M|1|2|C|1481
4U3M|1|2|C|1482
4U3M|1|2|A|1483
4U3M|1|2|G|1484
4U3M|1|2|C|1485
4U3M|1|2|G|1486
4U3M|1|2|A|1487
*
4U3M|1|2|U|1519
4U3M|1|2|U|1520
4U3M|1|2|G|1521
4U3M|1|2|U|1522
4U3M|1|2|G|1523
4U3M|1|2|A|1524
4U3M|1|2|A|1525
4U3M|1|2|A|1526
4U3M|1|2|C|1527

Current chains

Chain 2
18S rRNA

Nearby chains

Chain C6
40S ribosomal protein S16-A
Chain C9
40S ribosomal protein S19-A
Chain D0
40S ribosomal protein S20
Chain D9
40S ribosomal protein S29-A
Chain S3
40S ribosomal protein S3
Chain S5
40S ribosomal protein S5

Coloring options:


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