IL_4U3N_403

3D structure

PDB id

4U3N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCUUG*CUUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3N_403 not in the Motif Atlas

Homologous match to IL_4V88_422

Geometric discrepancy: 0.0963

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4U3N|1|6|C|708
4U3N|1|6|C|709
4U3N|1|6|U|710
4U3N|1|6|U|711
4U3N|1|6|G|712
*
4U3N|1|6|C|726
4U3N|1|6|U|727
4U3N|1|6|U|728
4U3N|1|6|G|729
4U3N|1|6|G|730

Current chains

Chain 6

18S ribosomal RNA

Nearby chains