IL_4U3U_067

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

4U3U|1|1|U|1629, 4U3U|1|1|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3U_067 not in the Motif Atlas

Homologous match to IL_5TBW_066

Geometric discrepancy: 0.0807

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4U3U|1|1|U|1627
4U3U|1|1|C|1628
4U3U|1|1|U|1629
4U3U|1|1|U|1630
4U3U|1|1|C|1631
*
4U3U|1|1|G|1811
4U3U|1|1|G|1812
4U3U|1|1|A|1813
4U3U|1|1|A|1814
4U3U|1|1|U|1815
4U3U|1|1|A|1816

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N7

60S ribosomal protein L27-A