IL_4U3U_108

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

4U3U|1|1|G|2945, 4U3U|1|1|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3U_108 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0933

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4U3U|1|1|C|2879
4U3U|1|1|U|2880
4U3U|1|1|C|2881
*
4U3U|1|1|G|2943
4U3U|1|1|U|2944
4U3U|1|1|G|2945
4U3U|1|1|A|2946
4U3U|1|1|G|2947

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain N3

60S ribosomal protein L23-A