IL_4U3U_165

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3U_165 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.092

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

4U3U|1|2|A|550
4U3U|1|2|G|551
4U3U|1|2|G|552
4U3U|1|2|G|553
4U3U|1|2|C|554
4U3U|1|2|A|555
4U3U|1|2|A|556
4U3U|1|2|G|557
*
4U3U|1|2|C|587
4U3U|1|2|U|588

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A

Chain SM

Suppressor protein STM1