3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UCUUC*GGAAUA
Length
11 nucleotides
Bulged bases
4U3U|1|5|U|1629, 4U3U|1|5|U|1815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3U_301 not in the Motif Atlas
Homologous match to IL_5TBW_066
Geometric discrepancy: 0.1458
The information below is about IL_5TBW_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_48431.1
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

4U3U|1|5|U|1627
4U3U|1|5|C|1628
4U3U|1|5|U|1629
4U3U|1|5|U|1630
4U3U|1|5|C|1631
*
4U3U|1|5|G|1811
4U3U|1|5|G|1812
4U3U|1|5|A|1813
4U3U|1|5|A|1814
4U3U|1|5|U|1815
4U3U|1|5|A|1816

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain n7
60S ribosomal protein L27-A

Coloring options:


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