IL_4U3U_381

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3U_381 not in the Motif Atlas

Homologous match to IL_4V88_396

Geometric discrepancy: 0.1076

The information below is about IL_4V88_396

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4U3U|1|6|C|186
4U3U|1|6|G|187
4U3U|1|6|A|188
4U3U|1|6|C|189
*
4U3U|1|6|G|196
4U3U|1|6|A|197
4U3U|1|6|A|198
4U3U|1|6|G|199

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s8

40S ribosomal protein S8-A