3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GAC*GUUU
Length
7 nucleotides
Bulged bases
4U3U|1|6|U|959
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3U_411 not in the Motif Atlas
Geometric match to IL_5UNE_004
Geometric discrepancy: 0.2587
The information below is about IL_5UNE_004
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

4U3U|1|6|G|868
4U3U|1|6|A|869
4U3U|1|6|C|870
*
4U3U|1|6|G|957
4U3U|1|6|U|958
4U3U|1|6|U|959
4U3U|1|6|U|960

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c3
40S ribosomal protein S13
Chain d7
40S ribosomal protein S27-A

Coloring options:


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