3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUUG*CUUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3U_443 not in the Motif Atlas
Homologous match to IL_4V88_461
Geometric discrepancy: 0.0554
The information below is about IL_4V88_461
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_36174.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
15

Unit IDs

4U3U|1|6|C|1495
4U3U|1|6|U|1496
4U3U|1|6|U|1497
4U3U|1|6|G|1498
*
4U3U|1|6|C|1509
4U3U|1|6|U|1510
4U3U|1|6|U|1511
4U3U|1|6|G|1512

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c9
40S ribosomal protein S19-A

Coloring options:


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