IL_4U3U_482

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGGU*ACCUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3U_482 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3366

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4U3U|1|5|G|1018
4U3U|1|5|G|1019
4U3U|1|5|G|1020
4U3U|1|5|G|1021
4U3U|1|5|U|1022
*
4U3U|1|5|A|1030
4U3U|1|5|C|1031
4U3U|1|5|C|1032
4U3U|1|5|U|1033
4U3U|1|5|U|1034

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m0

60S ribosomal protein L10

Chain sM

Suppressor protein STM1