IL_4U4O_040
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUUA*UUCUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4O_040 not in the Motif Atlas
- Homologous match to IL_8C3A_044
- Geometric discrepancy: 0.12
- The information below is about IL_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
4U4O|1|1|G|1005
4U4O|1|1|A|1006
4U4O|1|1|U|1007
4U4O|1|1|U|1008
4U4O|1|1|A|1009
*
4U4O|1|1|U|1041
4U4O|1|1|U|1042
4U4O|1|1|C|1043
4U4O|1|1|U|1044
4U4O|1|1|C|1045
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L5
- 60S ribosomal protein L5
- Chain M0
- 60S ribosomal protein L10
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