IL_4U4O_144

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AAUC*GAU

Length

7 nucleotides

Bulged bases

4U4O|1|2|A|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4O_144 not in the Motif Atlas

Geometric match to IL_4WF9_055

Geometric discrepancy: 0.3419

The information below is about IL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

4U4O|1|2|A|265
4U4O|1|2|A|266
4U4O|1|2|U|267
4U4O|1|2|C|268
*
4U4O|1|2|G|287
4U4O|1|2|A|288
4U4O|1|2|U|289

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A