IL_4U4O_178
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGGAU*GCACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4O_178 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3665
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
4U4O|1|2|G|1040
4U4O|1|2|G|1041
4U4O|1|2|G|1042
4U4O|1|2|A|1043
4U4O|1|2|U|1044
*
4U4O|1|2|G|1074
4U4O|1|2|C|1075
4U4O|1|2|A|1076
4U4O|1|2|C|1077
4U4O|1|2|C|1078
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C3
- 40S ribosomal protein S13
- Chain D1
- 40S ribosomal protein S21-A
- Chain D2
- 40S ribosomal protein S22-A
- Chain D6
- 40S ribosomal protein S26-B
- Chain D7
- 40S ribosomal protein S27-A
- Chain S0
- 40S ribosomal protein S0-A
- Chain S1
- 40S ribosomal protein S1-A
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