IL_4U4O_206
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4O_206 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.359
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28833.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4U4O|1|2|C|1644
4U4O|1|2|G|1645
4U4O|1|2|C|1646
4U4O|1|2|U|1647
*
4U4O|1|2|A|1753
4U4O|1|2|A|1754
4U4O|1|2|A|1755
4U4O|1|2|A|1756
4U4O|1|2|G|1757
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D3
- 40S ribosomal protein S23-A
- Chain E0
- 40S ribosomal protein S30-A
- Chain Q1
- 60S ribosomal protein L41-A
- Chain SM
- Suppressor protein STM1
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