IL_4U4O_400

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGACG*CGUUUU

Length

11 nucleotides

Bulged bases

4U4O|1|6|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4O_400 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3635

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4U4O|1|6|G|867
4U4O|1|6|G|868
4U4O|1|6|A|869
4U4O|1|6|C|870
4U4O|1|6|G|871
*
4U4O|1|6|C|956
4U4O|1|6|G|957
4U4O|1|6|U|958
4U4O|1|6|U|959
4U4O|1|6|U|960
4U4O|1|6|U|961

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c3

40S ribosomal protein S13

Chain d7

40S ribosomal protein S27-A