IL_4U4O_487
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UGGC*GUCUGUGA
- Length
- 12 nucleotides
- Bulged bases
- 4U4O|1|2|U|1432, 4U4O|1|2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4O_487 not in the Motif Atlas
- Homologous match to IL_8C3A_457
- Geometric discrepancy: 0.1406
- The information below is about IL_8C3A_457
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_55620.1
- Basepair signature
- cWW-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4U4O|1|2|U|1276
4U4O|1|2|G|1277
4U4O|1|2|G|1278
4U4O|1|2|C|1279
*
4U4O|1|2|G|1429
4U4O|1|2|U|1430
4U4O|1|2|C|1431
4U4O|1|2|U|1432
4U4O|1|2|G|1433
4U4O|1|2|U|1434
4U4O|1|2|G|1435
4U4O|1|2|A|1436
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C0
- 40S ribosomal protein S10-A
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain S3
- 40S ribosomal protein S3
- Chain SM
- Suppressor protein STM1
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