IL_4U4O_500

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

4U4O|1|5|A|2242, 4U4O|1|5|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4O_500 not in the Motif Atlas

Geometric match to IL_7DLZ_003

Geometric discrepancy: 0.245

The information below is about IL_7DLZ_003

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4U4O|1|5|U|2200
4U4O|1|5|G|2201
4U4O|1|5|C|2202
*
4U4O|1|5|G|2240
4U4O|1|5|U|2241
4U4O|1|5|A|2242
4U4O|1|5|A|2243
4U4O|1|5|A|2244

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain l2

60S ribosomal protein L2-A