IL_4U4O_516
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAUC*GGCAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4O_516 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3555
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
4U4O|1|6|G|1041
4U4O|1|6|G|1042
4U4O|1|6|A|1043
4U4O|1|6|U|1044
4U4O|1|6|C|1045
*
4U4O|1|6|G|1073
4U4O|1|6|G|1074
4U4O|1|6|C|1075
4U4O|1|6|A|1076
4U4O|1|6|C|1077
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c3
- 40S ribosomal protein S13
- Chain d6
- 40S ribosomal protein S26-B
- Chain d7
- 40S ribosomal protein S27-A
- Chain s0
- 40S ribosomal protein S0-A
- Chain s1
- 40S ribosomal protein S1-A
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