IL_4U4Q_204

3D structure

PDB id

4U4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGC*GUUAUC

Length

10 nucleotides

Bulged bases

4U4Q|1|2|U|1370, 4U4Q|1|2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Q_204 not in the Motif Atlas

Geometric match to IL_205D_001

Geometric discrepancy: 0.3965

The information below is about IL_205D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4U4Q|1|2|G|1352
4U4Q|1|2|U|1353
4U4Q|1|2|G|1354
4U4Q|1|2|C|1355
*
4U4Q|1|2|G|1368
4U4Q|1|2|U|1369
4U4Q|1|2|U|1370
4U4Q|1|2|A|1371
4U4Q|1|2|U|1372
4U4Q|1|2|C|1373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C9

40S ribosomal protein S19-A

Chain D0

40S ribosomal protein S20