IL_4U4Q_351

3D structure

PDB id

4U4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Q_351 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.2168

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4U4Q|1|5|A|3168
4U4Q|1|5|U|3169
4U4Q|1|5|A|3170
4U4Q|1|5|U|3171
*
4U4Q|1|5|A|3279
4U4Q|1|5|U|3280
4U4Q|1|5|U|3281
4U4Q|1|5|U|3282

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o3

60S ribosomal protein L33-A