IL_4U4Q_408

3D structure

PDB id

4U4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Q_408 not in the Motif Atlas

Geometric match to IL_4V88_427

Geometric discrepancy: 0.0765

The information below is about IL_4V88_427

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

4U4Q|1|6|U|822
4U4Q|1|6|G|823
4U4Q|1|6|G|824
*
4U4Q|1|6|C|848
4U4Q|1|6|C|849
4U4Q|1|6|A|850

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain m9

60S ribosomal protein L19-A