IL_4U4R_440

3D structure

PDB id

4U4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

4U4R|1|6|A|1346, 4U4R|1|6|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4R_440 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.0561

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

4U4R|1|6|A|1345
4U4R|1|6|A|1346
4U4R|1|6|U|1347
4U4R|1|6|A|1348
*
4U4R|1|6|U|1377
4U4R|1|6|U|1378
4U4R|1|6|C|1379
4U4R|1|6|U|1380

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain d0

40S ribosomal protein S20