IL_4U4R_480

3D structure

PDB id

4U4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4R_480 not in the Motif Atlas

Homologous match to IL_8C3A_507

Geometric discrepancy: 0.0978

The information below is about IL_8C3A_507

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.1

Basepair signature

cWW-tSH-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4U4R|1|2|G|1540
4U4R|1|2|G|1541
4U4R|1|2|G|1542
4U4R|1|2|A|1543
4U4R|1|2|U|1544
4U4R|1|2|A|1545
*
4U4R|1|2|U|1566
4U4R|1|2|U|1567
4U4R|1|2|C|1568
4U4R|1|2|A|1569
4U4R|1|2|A|1570
4U4R|1|2|C|1571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A