Motif IL_85536.1 Version IL_85536.1 of this group appears in releases 3.91 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_057 | 5J7L | 0.1780 | 0 | AA | SSU rRNA | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | * | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | cWW | tSH | tHS | cWw | cWW | ||
| 2 | IL_4LFB_055 | 4LFB | 0.1133 | 0 | A | SSU rRNA | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | * | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | cWW | tSH | ntSH | ntHS | cWw | cWW | |
| 3 | IL_8C3A_507 | 8C3A | 0.0000 | 0 | CM | SSU rRNA | G | 1527 | G | 1528 | G | 1529 | A | 1530 | U | 1531 | A | 1532 | * | U | 1553 | U | 1554 | C | 1555 | A | 1556 | A | 1557 | C | 1558 | cWW | tSH | ntSH | cWw | ncWW | ||
| 4 | IL_8P9A_451 | 8P9A | 0.1118 | 0 | sR | SSU rRNA | G | 1540 | G | 1541 | G | 1542 | A | 1543 | U | 1544 | A | 1545 | * | U | 1566 | U | 1567 | C | 1568 | A | 1569 | A | 1570 | C | 1571 | cWW | tSH | ntSH | cWw | cWW | ||
| 5 | IL_8P9A_254 | 8P9A | 0.1921 | 0 | AR | LSU rRNA | C | 768 | G | 769 | G | 770 | A | 771 | U | 772 | G | 773 | * | C | 758 | U | 759 | G | 760 | A | 761 | U | 762 | G | 763 | cWW | tSH | ntSH | tHS | cWw | cWW | |
| 6 | IL_8P9A_410 | 8P9A | 0.4408 | 0 | Triple sheared related (H) | sR | SSU rRNA | G | 703 | C | 704 | U | 705 | A | 706 | A | 707 | C | 708 | * | G | 730 | C | 731 | G | 732 | A | 733 | A | 734 | C | 735 | cWW | ncWW | ntHS | cWW | cWW | |
| 7 | IL_6AAY_001 | 6AAY | 0.8481 | 2 | B | RNA (52-MER) | U | 49 | A | 50 | A | 51 | C | 53 | A | 54 | C | 55 | * | G | 26 | G | 27 | A | 28 | A | 29 | U | 31 | G | 32 | cWW | tHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAUU*AUGAAG | 2 |
| GGGAUA*UUCAAC | 2 |
| CGGAUG*CUGAUG | 1 |
| GCUAAC*GCGAAC | 1 |
| UAAUCAC*GGAACUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAU*UGAA | 2 |
| GGAU*UCAA | 2 |
| GGAU*UGAU | 1 |
| CUAA*CGAA | 1 |
| AAUCA*GAACU | 1 |
- Annotations
-
- (6)
- Triple sheared related (H) (1)
- Basepair signature
- cWW-tSH-L-R-L-R-cWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.37 | Max 0.96
Coloring options: