IL_4U4U_146

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4U4U|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4U_146 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.094

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4U4U|1|2|G|143
4U4U|1|2|U|144
4U4U|1|2|A|145
4U4U|1|2|U|146
4U4U|1|2|A|147
4U4U|1|2|A|148
4U4U|1|2|C|149
*
4U4U|1|2|G|165
4U4U|1|2|C|166
4U4U|1|2|U|167
4U4U|1|2|A|168
4U4U|1|2|A|169
4U4U|1|2|U|170
4U4U|1|2|A|171
4U4U|1|2|C|172

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A