IL_4U4U_241
3D structure
- PDB id
- 4U4U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Lycorine bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUC*GAGUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4U_241 not in the Motif Atlas
- Homologous match to IL_5TBW_011
- Geometric discrepancy: 0.2126
- The information below is about IL_5TBW_011
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.3
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
4U4U|1|5|U|177
4U4U|1|5|U|178
4U4U|1|5|C|179
*
4U4U|1|5|G|237
4U4U|1|5|A|238
4U4U|1|5|G|239
4U4U|1|5|U|240
4U4U|1|5|G|241
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain m3
- 60S ribosomal protein L13-A
- Chain o5
- 60S ribosomal protein L35-A
- Chain o7
- 60S ribosomal protein L37-A
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