IL_4U4U_417
3D structure
- PDB id
- 4U4U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Lycorine bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4U_417 not in the Motif Atlas
- Homologous match to IL_4V88_438
- Geometric discrepancy: 0.0599
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4U4U|1|6|G|1041
4U4U|1|6|G|1042
4U4U|1|6|A|1043
4U4U|1|6|U|1044
*
4U4U|1|6|G|1074
4U4U|1|6|C|1075
4U4U|1|6|A|1076
4U4U|1|6|C|1077
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c3
- 40S ribosomal protein S13
- Chain d6
- 40S ribosomal protein S26-B
- Chain s0
- 40S ribosomal protein S0-A
- Chain s1
- 40S ribosomal protein S1-A
Coloring options: