IL_4U4U_440

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4U4U|1|6|C|1637, 4U4U|1|6|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4U_440 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.0451

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4U4U|1|6|C|1636
4U4U|1|6|C|1637
4U4U|1|6|G|1638
*
4U4U|1|6|C|1764
4U4U|1|6|A|1765
4U4U|1|6|A|1766
4U4U|1|6|G|1767

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c4

40S ribosomal protein S14-A

Chain d6

40S ribosomal protein S26-B