3D structure

PDB id
4U4U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Lycorine bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AGCC*GUUGUU
Length
10 nucleotides
Bulged bases
4U4U|1|1|U|3354, 4U4U|1|1|U|3355
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U4U_471 not in the Motif Atlas
Geometric match to IL_3WBM_003
Geometric discrepancy: 0.2213
The information below is about IL_3WBM_003
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

4U4U|1|1|A|3347
4U4U|1|1|G|3348
4U4U|1|1|C|3349
4U4U|1|1|C|3350
*
4U4U|1|1|G|3353
4U4U|1|1|U|3354
4U4U|1|1|U|3355
4U4U|1|1|G|3356
4U4U|1|1|U|3357
4U4U|1|1|U|3358

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain N2
60S ribosomal protein L22-A
Chain S8
40S ribosomal protein S8-A

Coloring options:


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