IL_4U4Y_350

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CACA*UGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Y_350 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2358

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4U4Y|1|5|C|3164
4U4Y|1|5|A|3165
4U4Y|1|5|C|3166
4U4Y|1|5|A|3167
*
4U4Y|1|5|U|3283
4U4Y|1|5|G|3284
4U4Y|1|5|C|3285
4U4Y|1|5|G|3286

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o3

60S ribosomal protein L33-A