IL_4U4Y_403

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Y_403 not in the Motif Atlas

Homologous match to IL_4V88_421

Geometric discrepancy: 0.1008

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4U4Y|1|6|G|703
4U4Y|1|6|C|704
4U4Y|1|6|U|705
4U4Y|1|6|A|706
4U4Y|1|6|A|707
4U4Y|1|6|C|708
*
4U4Y|1|6|G|730
4U4Y|1|6|C|731
4U4Y|1|6|G|732
4U4Y|1|6|A|733
4U4Y|1|6|A|734
4U4Y|1|6|C|735

Current chains

Chain 6

18S ribosomal RNA

Nearby chains