IL_4U4Y_404

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Y_404 not in the Motif Atlas

Geometric match to IL_4UYK_003

Geometric discrepancy: 0.1774

The information below is about IL_4UYK_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4U4Y|1|6|C|709
4U4Y|1|6|U|710
4U4Y|1|6|U|711
4U4Y|1|6|G|712
*
4U4Y|1|6|C|726
4U4Y|1|6|U|727
4U4Y|1|6|U|728
4U4Y|1|6|G|729

Current chains

Chain 6

18S ribosomal RNA

Nearby chains