IL_4U4Y_415

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUUG*UUAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Y_415 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.223

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4U4Y|1|6|A|892
4U4Y|1|6|U|893
4U4Y|1|6|U|894
4U4Y|1|6|G|895
*
4U4Y|1|6|U|917
4U4Y|1|6|U|918
4U4Y|1|6|A|919
4U4Y|1|6|U|920

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c4

40S ribosomal protein S14-A

Chain l2

60S ribosomal protein L2-A

Chain s1

40S ribosomal protein S1-A