IL_4U4Y_476

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Y_476 not in the Motif Atlas

Homologous match to IL_8P9A_349

Geometric discrepancy: 0.2523

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4U4Y|1|1|C|3162
4U4Y|1|1|A|3163
4U4Y|1|1|C|3164
4U4Y|1|1|A|3165
4U4Y|1|1|C|3166
*
4U4Y|1|1|G|3284
4U4Y|1|1|C|3285
4U4Y|1|1|G|3286
4U4Y|1|1|U|3287
4U4Y|1|1|G|3288

Current chains

Chain 1

25S ribosomal RNA

Nearby chains