IL_4U4Y_480

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

4U4Y|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Y_480 not in the Motif Atlas

Homologous match to IL_8C3A_510

Geometric discrepancy: 0.1225

The information below is about IL_8C3A_510

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

4U4Y|1|2|G|868
4U4Y|1|2|A|869
4U4Y|1|2|C|870
*
4U4Y|1|2|G|957
4U4Y|1|2|U|958
4U4Y|1|2|U|959
4U4Y|1|2|U|960

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C3

40S ribosomal protein S13

Chain D7

40S ribosomal protein S27-A