IL_4U4Y_481

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

4U4Y|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Y_481 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.3153

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4U4Y|1|2|U|893
4U4Y|1|2|U|894
4U4Y|1|2|G|895
4U4Y|1|2|U|896
4U4Y|1|2|C|897
4U4Y|1|2|A|898
4U4Y|1|2|G|899
*
4U4Y|1|2|C|910
4U4Y|1|2|U|911
4U4Y|1|2|U|912
4U4Y|1|2|G|913
4U4Y|1|2|G|914
4U4Y|1|2|A|915
4U4Y|1|2|U|916
4U4Y|1|2|U|917
4U4Y|1|2|U|918
4U4Y|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-A

Chain S1

40S ribosomal protein S1-A