IL_4U4Z_174

3D structure

PDB id

4U4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Phyllanthoside bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

4U4Z|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Z_174 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.2602

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4U4Z|1|2|G|868
4U4Z|1|2|A|869
4U4Z|1|2|C|870
*
4U4Z|1|2|G|957
4U4Z|1|2|U|958
4U4Z|1|2|U|959
4U4Z|1|2|U|960

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C3

40S ribosomal protein S13

Chain D7

40S ribosomal protein S27-A