3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUUA*UUUC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_143 not in the Motif Atlas
Homologous match to IL_4V88_391
Geometric discrepancy: 0.0942
The information below is about IL_4V88_391
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

4U50|1|2|G|109
4U50|1|2|U|110
4U50|1|2|U|111
4U50|1|2|A|112
*
4U50|1|2|U|302
4U50|1|2|U|303
4U50|1|2|U|304
4U50|1|2|C|305

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C1
40S ribosomal protein S11-A
Chain S4
40S ribosomal protein S4-A
Chain S8
40S ribosomal protein S8-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1399 s