IL_4U50_143
3D structure
- PDB id
- 4U50 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Verrucarin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUA*UUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U50_143 not in the Motif Atlas
- Homologous match to IL_4V88_391
- Geometric discrepancy: 0.0942
- The information below is about IL_4V88_391
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4U50|1|2|G|109
4U50|1|2|U|110
4U50|1|2|U|111
4U50|1|2|A|112
*
4U50|1|2|U|302
4U50|1|2|U|303
4U50|1|2|U|304
4U50|1|2|C|305
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C1
- 40S ribosomal protein S11-A
- Chain S4
- 40S ribosomal protein S4-A
- Chain S8
- 40S ribosomal protein S8-A
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