IL_4U50_200

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U50_200 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.2133

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

4U50|1|2|C|1306
4U50|1|2|U|1307
4U50|1|2|G|1308
*
4U50|1|2|C|1317
4U50|1|2|G|1318

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C7

40S ribosomal protein S17-A

Chain D6

40S ribosomal protein S26-B