3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGC*GAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_218 not in the Motif Atlas
Homologous match to IL_4V88_472
Geometric discrepancy: 0.0992
The information below is about IL_4V88_472
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

4U50|1|2|G|1672
4U50|1|2|G|1673
4U50|1|2|C|1674
*
4U50|1|2|G|1727
4U50|1|2|A|1728
4U50|1|2|C|1729

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain N4
60S ribosomal protein L24-A
Chain S6
40S ribosomal protein S6-A
Chain S8
40S ribosomal protein S8-A

Coloring options:


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