3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UGCCGGAA*UA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_279 not in the Motif Atlas
Homologous match to IL_5TBW_049
Geometric discrepancy: 0.0507
The information below is about IL_5TBW_049
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_84902.1
Basepair signature
cWW-L-cWW-L-L-R-cHH
Number of instances in this motif group
2

Unit IDs

4U50|1|5|U|1173
4U50|1|5|G|1174
4U50|1|5|C|1175
4U50|1|5|C|1176
4U50|1|5|G|1177
4U50|1|5|G|1178
4U50|1|5|A|1179
4U50|1|5|A|1180
*
4U50|1|5|U|1325
4U50|1|5|A|1326

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l7
60S ribosomal protein L7-A
Chain m6
60S ribosomal protein L16-A
Chain n0
60S ribosomal protein L20-A
Chain o3
60S ribosomal protein L33-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2698 s