Motif IL_84902.1 Version IL_84902.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 5-6 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_052 | 8C3A | 0.0000 | 0 | SSU/LSU pseudoknot | 1 | LSU rRNA | U | 1169 | G | 1170 | C | 1171 | C | 1172 | G | 1173 | G | 1174 | A | 1175 | A | 1176 | * | U | 1321 | A | 1322 | cWW | nchH | cWW |
| 2 | IL_5TBW_049 | 5TBW | 0.1180 | 0 | SSU/LSU pseudoknot | 1 | LSU rRNA | U | 1173 | G | 1174 | C | 1175 | C | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | * | U | 1325 | A | 1326 | cWW | chH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCCGGAA*UA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCCGGA* | 2 |
- Annotations
-
- SSU/LSU pseudoknot (2)
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Heat map statistics
- Min 0.12 | Avg 0.06 | Max 0.12
Coloring options: